JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CX3CR1_chr3_39258496_39285036	1/0	a0001	355	358	84	60	160	12	41	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	a0002	355	32	1	14	9	1	7	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/1	a0003	355	23	11	8	0	1	2	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	a0004	355	5	0	0	5	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	a0005	355	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	a0006	355	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CXADR_chr21_17508043_17575100	1/1	a0001	365	343	88	56	143	12	42	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	a0002	365	4	4	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	a0003	365	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	a0004	365	2	0	0	0	0	2	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	a0005	365	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXCL10_chr4_76016118_76028497	1/1	a0001	98	424	92	74	194	16	46	copy fasta	CXCL10	chr4	76016118	76028497
CXCL11_chr4_76028682_76041070	0/0	a0000	0	1	0	1	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	1/1	a0001	94	421	90	65	210	10	44	copy fasta	CXCL11	chr4	76028682	76041070
CXCL12_chr10_44372067_44390097	1/1	a0001	89	441	96	72	208	17	46	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	a0002	89	1	0	0	0	1	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL13_chr4_77600820_77616834	1/1	a0001	109	366	96	72	140	14	42	copy fasta	CXCL13	chr4	77600820	77616834
CXCL14_chr5_135565679_135583991	1/1	a0001	99	401	92	76	173	16	42	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	a0002	99	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL16_chr17_4728533_4744928	0/1	a0001	254	211	23	39	110	8	30	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	1/0	a0002	254	208	64	39	81	8	15	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0003	254	5	3	0	0	0	2	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0004	254	4	4	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0005	27	3	0	0	3	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0006	254	2	2	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0007	254	1	0	0	0	0	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0008	254	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0009	254	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0010	254	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	a0011	254	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL17_chr19_42423278_42447946	1/1	a0001	119	364	87	70	151	12	42	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	a0002	119	3	0	0	3	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	a0003	119	1	1	0	0	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL1_chr4_73864393_73876308	1/1	a0001	107	444	91	72	223	14	42	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	a0002	107	2	2	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	a0003	107	1	1	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	a0004	107	1	0	0	1	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL2_chr4_74092040_74104195	1/1	a0001	107	391	92	55	188	12	42	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	a0002	107	3	0	3	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	a0003	107	2	0	2	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	a0004	107	2	2	0	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL3_chr4_74031589_74043689	1/1	a0001	107	349	95	57	157	14	24	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	a0002	107	34	3	1	28	0	2	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	a0003	107	1	0	0	1	0	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL5_chr4_73990642_74003677	1/1	a0001	114	389	91	68	170	16	42	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	a0002	114	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL6_chr4_73831678_73843760	1/1	a0001	114	443	98	78	213	18	34	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	a0002	92	1	0	0	1	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL8_chr4_73735569_73748716	1/1	a0001	99	388	96	54	182	14	40	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	a0002	30	1	0	0	0	1	0	copy fasta	CXCL8	chr4	73735569	73748716