JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CXCL8_chr4_73735569_73748716	0/0	a0003	99	1	0	0	0	1	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL9_chr4_75996275_76012509	1/1	a0001	125	436	92	72	216	12	42	copy fasta	CXCL9	chr4	75996275	76012509
CXCR1_chr2_218157841_218171962	1/1	a0001	350	258	57	58	96	14	31	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0002	350	58	20	13	19	0	6	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0003	350	9	0	3	4	0	2	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0004	350	6	6	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0005	350	4	4	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0006	350	2	1	0	1	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0007	350	2	0	0	0	0	2	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0008	350	2	2	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0009	238	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0010	350	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	a0011	350	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962
CXCR2_chr2_218121028_218142251	1/1	a0001	360	361	89	68	153	12	37	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	a0002	360	1	0	0	1	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	a0003	360	1	0	0	0	0	1	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	a0004	360	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR3_chrX_71610919_71623511	1/1	a0001	368	322	70	57	152	9	32	copy fasta	CXCR3	chrX	71610919	71623511
CXCR3_chrX_71610919_71623511	0/0	a0002	358	1	0	0	1	0	0	copy fasta	CXCR3	chrX	71610919	71623511
CXCR4_chr2_136109349_136123149	1/1	a0001	352	404	96	81	173	14	38	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	a0002	352	1	0	0	1	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	a0003	352	1	0	1	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR5_chr11_118878892_118902787	1/1	a0001	372	363	96	77	129	13	46	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	a0002	372	2	0	1	0	1	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	a0003	372	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	a0004	372	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	a0005	372	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR6_chr3_45938464_45953351	1/1	a0001	342	376	52	63	202	15	42	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	a0002	342	43	40	3	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	a0003	342	1	0	0	0	1	0	copy fasta	CXCR6	chr3	45938464	45953351
CXXC1_chr18_50277347_50292692	1/1	a0001	656	417	97	79	175	18	46	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	a0002	656	2	0	0	2	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	a0003	656	1	1	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	a0004	656	1	0	0	1	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	a0005	656	1	0	1	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC4_chr4_104463308_104499894	1/1	a0001	367	302	82	58	119	8	33	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	a0002	195	20	4	7	6	0	3	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	a0003	367	5	0	0	5	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	a0004	367	2	2	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	a0005	367	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	a0006	367	1	0	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	a0007	361	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC5_chr5_139643349_139688882	1/1	a0001	322	264	89	60	63	16	34	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	a0002	322	1	0	0	1	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	a0003	322	1	1	0	0	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXorf38_chrX_40621921_40652561	1/1	a0001	319	300	77	54	127	13	27	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	a0002	319	3	3	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	a0003	319	1	0	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf49B_chrX_71758349_71772204	0/0	a0001	514	59	12	18	14	7	8	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0002	514	19	8	2	7	0	2	copy fasta	CXorf49B	chrX	71758349	71772204