JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CXorf66_chrX_139950728_139970521	0/0	a0002	361	132	53	21	57	0	1	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	a0003	361	2	2	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	a0004	361	1	0	0	1	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	a0005	361	1	1	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CYB561A3_chr11_61343805_61366882	0/0	a0001	242	257	84	46	87	8	32	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	a0002	242	2	2	0	0	0	0	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	a0003	242	1	0	0	1	0	0	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561D1_chr1_109489094_109505435	1/1	a0001	229	367	98	66	147	14	40	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	a0002	229	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	a0003	229	1	0	0	1	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	a0004	229	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D2_chr3_50345862_50359069	1/1	a0001	222	345	86	65	148	16	28	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	a0002	222	1	0	0	1	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	a0003	222	1	0	0	1	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	a0004	222	1	0	1	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561_chr17_63427304_63451306	1/1	a0001	251	385	97	80	148	16	42	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	a0002	251	1	1	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB5A_chr18_74245846_74296963	1/1	a0001	134	393	90	65	192	10	34	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	a0002	134	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	a0003	134	1	0	1	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5B_chr16_69419619_69471264	1/1	a0001	150	396	96	64	183	16	35	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	a0002	150	8	0	0	8	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	a0003	150	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	a0004	150	1	0	0	0	0	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5D1_chr17_7853003_7867282	1/1	a0001	228	316	53	58	148	18	37	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	a0002	228	119	41	17	50	0	11	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	a0003	228	3	0	3	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	a0004	228	1	0	0	1	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	a0005	228	1	0	0	1	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D2_chr17_4138197_4162697	1/1	a0001	264	364	94	63	153	18	34	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	a0002	264	3	0	3	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	a0003	264	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	a0004	264	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	a0005	264	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5R1_chr1_202956873_202972257	1/1	a0001	305	329	84	62	141	10	30	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	a0002	305	117	12	16	81	0	8	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	a0003	305	1	0	0	0	0	1	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	a0004	305	1	0	0	1	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	a0005	305	1	0	0	1	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	a0006	305	1	0	0	0	0	1	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R2_chr11_7660104_7678500	0/1	a0001	276	264	36	43	146	13	25	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	1/0	a0002	276	105	15	30	42	5	12	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0003	276	29	18	2	7	0	2	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0004	276	21	8	6	5	0	2	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0005	276	15	10	4	0	0	1	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0006	276	4	2	0	0	0	2	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0007	276	2	2	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0008	276	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0009	276	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	a0010	276	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500