JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYB5R2_chr11_7660104_7678500	0/0	a0011	276	1	0	1	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R3_chr22_42612840_42654392	1/1	a0001	301	314	52	71	135	10	44	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0002	301	38	35	3	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0003	301	3	3	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0004	301	1	0	0	0	0	1	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0005	301	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0006	301	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0007	301	1	0	0	0	0	1	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	a0008	301	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R4_chr6_83854689_83972423	1/1	a0001	521	201	61	43	77	8	10	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0002	521	16	16	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0003	521	4	4	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0004	521	2	0	0	2	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0005	521	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0006	521	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0007	521	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0008	521	1	0	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	a0009	521	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5RL_chr1_54164651_54205030	1/0	a0001	315	269	68	46	123	10	21	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/1	a0002	315	111	19	21	48	5	17	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0003	315	10	1	4	0	1	4	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0004	315	4	0	2	0	0	2	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0005	315	4	3	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0006	315	3	0	0	0	1	2	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0007	315	3	3	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0008	315	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0009	315	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0010	315	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0011	315	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0012	315	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0013	315	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0014	315	1	0	0	0	1	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	a0015	315	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYBA_chr16_88638289_88656053	0/1	a0001	195	263	55	28	151	9	19	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0002	195	102	7	37	41	5	12	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0003	195	86	33	20	12	2	19	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	1/0	a0004	195	4	2	1	0	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0005	195	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0006	195	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0007	195	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0008	188	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	a0009	195	1	1	0	0	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBB_chrX_37775059_37818461	1/1	a0001	570	244	70	43	94	9	26	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	a0002	570	2	0	0	2	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBC1_chr17_82437586_82455752	1/1	a0001	187	414	98	78	176	16	44	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	a0002	187	2	0	0	0	2	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBRD1_chr2_171517474_171563129	0/1	a0001	286	242	76	44	81	7	33	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	1/0	a0002	286	149	10	22	102	5	9	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	a0003	286	2	0	0	2	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	a0004	286	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129