JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYC1_chr8_144090076_144102525	0/1	a0001	325	329	77	74	129	14	34	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	1/0	a0002	325	17	15	1	0	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	a0003	325	2	0	2	0	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	a0004	325	2	0	0	0	2	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	a0005	325	1	0	0	1	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	a0006	325	1	0	1	0	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYCS_chr7_25113656_25130260	1/1	a0001	105	436	98	72	200	16	48	copy fasta	CYCS	chr7	25113656	25130260
CYFIP1_chr15_22862052_22985368	1/1	a0001	1253	247	28	46	131	9	31	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0002	1253	79	53	12	0	6	8	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0003	1253	3	3	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0004	1253	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0005	1253	2	0	2	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0006	1253	2	0	0	0	1	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0007	1253	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0008	1253	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0009	1253	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0010	1253	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0011	1253	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0012	1253	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	a0013	1253	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP2_chr5_157261123_157400594	1/1	a0001	1253	326	90	64	120	14	36	copy fasta	CYFIP2	chr5	157261123	157400594
CYGB_chr17_76522356_76542709	1/1	a0001	190	395	97	74	158	16	48	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	a0002	190	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYLC1_chrX_83856146_83891698	1/1	a0001	651	176	29	33	80	11	21	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0002	651	12	10	2	0	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0003	651	6	0	2	4	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0004	651	4	0	2	2	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0005	651	2	0	0	0	0	2	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0006	651	2	0	0	0	0	2	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0007	199	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0008	370	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0009	651	1	0	0	0	0	1	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0010	353	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0011	651	1	0	0	0	0	1	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	a0012	223	1	1	0	0	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC2_chr9_102990333_103023488	1/1	a0001	348	392	83	82	173	9	43	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0002	348	36	0	0	34	1	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0003	344	4	3	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0004	348	3	0	0	3	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0005	344	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0006	348	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0007	348	2	1	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0008	348	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0009	348	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0010	348	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0011	348	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0012	348	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0013	348	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	a0014	348	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLD_chr16_50737086_50806935	1/1	a0001	956	301	84	56	121	12	26	copy fasta	CYLD	chr16	50737086	50806935