JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYLD_chr16_50737086_50806935	0/0	a0002	956	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYP11A1_chr15_74332762_74372646	1/1	a0001	521	375	87	60	177	10	39	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	a0002	521	1	1	0	0	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	a0003	521	1	1	0	0	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	a0004	521	1	0	0	0	0	1	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	a0005	521	1	0	0	1	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	a0006	521	1	1	0	0	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11B1_chr8_142867357_142884825	1/1	a0001	503	320	78	57	129	16	38	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0002	503	86	1	11	67	0	7	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0003	503	9	8	0	1	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0004	503	4	1	0	3	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0005	503	2	2	0	0	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0006	503	2	0	2	0	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0007	503	1	1	0	0	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0008	503	1	0	0	0	0	1	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0009	355	1	1	0	0	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0010	503	1	1	0	0	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B1_chr8_142867357_142884825	0/0	a0011	503	1	1	0	0	0	0	copy fasta	CYP11B1	chr8	142867357	142884825
CYP11B2_chr8_142905559_142922843	0/0	a0001	503	143	20	28	74	7	14	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0002	503	116	4	12	94	0	6	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	1/1	a0003	503	113	32	19	36	9	15	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0004	503	37	25	5	6	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0005	503	19	1	8	0	2	8	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0006	503	3	0	0	3	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0007	503	3	3	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0008	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0009	503	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0010	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0011	503	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0012	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0013	503	1	0	0	0	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0014	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0015	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0016	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0017	503	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0018	503	1	0	0	0	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	a0019	503	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP17A1_chr10_102825531_102842413	1/1	a0001	508	442	94	84	202	18	42	copy fasta	CYP17A1	chr10	102825531	102842413
CYP19A1_chr15_51203057_51343596	1/1	a0001	503	240	63	49	88	6	32	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	a0002	503	49	10	3	30	0	6	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	a0003	503	11	8	3	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	a0004	503	4	0	0	4	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	a0005	503	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	a0006	503	1	0	1	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP1A1_chr15_74714542_74730528	1/1	a0001	512	319	85	53	128	13	38	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0002	512	62	0	11	42	2	7	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0003	512	26	0	0	24	0	2	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0004	512	8	7	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0005	512	6	0	5	0	1	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0006	512	2	0	0	2	0	0	copy fasta	CYP1A1	chr15	74714542	74730528