JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP1A1_chr15_74714542_74730528	0/0	a0007	512	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0008	512	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0009	512	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0010	512	1	0	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0011	512	1	0	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0012	512	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0013	512	1	0	1	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0014	512	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0015	512	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0016	512	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	a0017	512	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A2_chr15_74743845_74761607	1/1	a0001	516	399	84	68	188	16	41	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0002	516	7	7	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0003	516	2	0	0	0	0	2	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0004	516	2	0	0	0	2	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0005	45	1	0	0	0	0	1	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0006	516	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0007	516	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0008	494	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0009	516	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	a0010	516	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1B1_chr2_38062509_38081151	1/0	a0001	543	121	2	22	88	1	7	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/1	a0002	543	100	44	17	21	8	9	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0003	543	68	15	17	18	3	15	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0004	543	33	28	3	1	0	1	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0005	543	24	0	11	2	2	9	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0006	543	5	5	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0007	543	5	0	0	0	0	5	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0008	543	3	2	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0009	543	2	0	0	2	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0010	543	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0011	543	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0012	543	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0013	543	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0014	543	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0015	543	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	a0016	543	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP20A1_chr2_203234018_203311026	0/0	a0001	462	181	55	36	71	8	11	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/1	a0002	462	109	4	32	49	6	17	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	1/0	a0003	462	39	20	4	13	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	a0004	462	2	2	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	a0005	300	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	a0006	462	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	a0007	462	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP21A2_chr6_32033415_32046644	0/0	a0001	495	233	55	27	117	11	23	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/1	a0002	494	86	1	26	49	3	6	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0003	495	60	22	15	16	0	7	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0004	495	11	11	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0005	495	8	1	4	3	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0006	495	6	0	0	6	0	0	copy fasta	CYP21A2	chr6	32033415	32046644