JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP21A2_chr6_32033415_32046644	0/0	a0007	318	5	1	2	0	0	2	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0008	494	5	2	1	0	0	2	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0009	495	4	0	0	3	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0010	495	4	1	0	2	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0011	311	4	0	0	3	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0012	494	4	0	1	0	2	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0013	494	4	0	0	2	0	2	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0014	495	3	0	1	0	1	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0015	495	3	0	3	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0016	495	2	2	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0017	312	2	0	1	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0018	495	2	0	2	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0019	494	2	0	1	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0020	495	1	0	0	0	1	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0021	495	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0022	495	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0023	495	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0024	495	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0025	495	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0026	495	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0027	312	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0028	312	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0029	494	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	a0030	289	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP24A1_chr20_54148446_54178986	1/1	a0001	514	427	80	80	208	11	46	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0002	514	8	8	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0003	514	3	0	0	0	0	3	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0004	514	3	2	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0005	514	3	0	0	3	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0006	514	2	2	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0007	514	2	0	0	2	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0008	514	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0009	514	1	0	0	0	0	1	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0010	514	1	0	0	1	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0011	514	1	0	0	0	1	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0012	514	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0013	514	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0014	514	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	a0015	514	1	0	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP26A1_chr10_93068893_93082885	1/1	a0001	497	406	88	74	182	14	46	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	a0002	497	6	6	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	a0003	497	2	0	2	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	a0004	497	1	1	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	a0005	497	1	0	1	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	a0006	497	1	0	1	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	a0007	497	1	1	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26B1_chr2_72124238_72152862	1/1	a0001	512	240	63	55	89	11	20	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0002	512	55	22	13	13	3	4	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0003	512	7	7	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0004	512	3	0	0	3	0	0	copy fasta	CYP26B1	chr2	72124238	72152862