JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP26B1_chr2_72124238_72152862	0/0	a0005	512	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0006	512	2	0	0	2	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0007	512	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0008	512	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	a0009	512	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26C1_chr10_93055798_93074540	1/1	a0001	522	368	82	63	166	15	40	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0002	522	20	7	10	1	1	1	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0003	522	4	4	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0004	522	2	2	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0005	522	1	0	1	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0006	522	1	0	0	1	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0007	522	1	0	0	0	0	1	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	a0008	522	1	1	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP27A1_chr2_218777147_218820293	1/1	a0001	531	285	89	57	97	10	30	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0002	531	3	3	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0003	531	2	2	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0004	531	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0005	531	1	0	0	1	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0006	531	1	0	0	0	0	1	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0007	531	1	0	0	0	0	1	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0008	531	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0009	531	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0010	531	1	0	1	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	a0011	531	1	1	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27B1_chr12_57757334_57772078	1/1	a0001	508	347	90	70	135	14	36	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	a0002	508	3	0	0	1	0	2	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	a0003	508	1	0	0	1	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	a0004	508	1	0	0	1	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27C1_chr2_127178832_127225299	1/0	a0001	537	322	73	68	129	10	41	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0002	537	15	14	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0003	537	6	6	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0004	537	3	2	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0005	537	2	2	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0006	537	1	0	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/1	a0007	537	1	0	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0008	537	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	a0009	537	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP2A13_chr19_41083451_41101195	1/1	a0001	494	351	54	80	166	10	39	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0002	494	38	19	4	12	0	3	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0003	494	8	6	0	2	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0004	494	6	6	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0005	494	4	1	0	0	0	3	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0006	494	3	3	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0007	494	2	2	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0008	494	2	1	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0009	494	1	0	0	0	0	1	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0010	494	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0011	100	1	0	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0012	494	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0013	494	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195