JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP2A13_chr19_41083451_41101195	0/0	a0014	494	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0015	494	1	0	0	0	0	1	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	a0016	494	1	0	0	0	0	1	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A6_chr19_40838541_40855447	0/0	a0000	0	7	0	0	6	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0001	494	290	64	69	106	16	35	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0002	494	17	0	0	17	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0003	494	9	9	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0004	494	6	0	0	6	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0005	494	3	0	0	3	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0006	494	3	0	2	0	1	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0007	494	3	0	0	3	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0008	494	3	0	2	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0009	494	3	0	2	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0010	494	3	3	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0011	494	2	2	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0012	203	2	2	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0013	494	2	0	0	0	0	2	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0014	494	2	0	0	2	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0015	24	2	0	1	0	1	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0016	84	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0017	494	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0018	494	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0019	494	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0020	56	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0021	62	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0022	84	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0023	84	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0024	494	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0025	173	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0026	190	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0027	191	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0028	219	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0029	494	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0030	494	1	0	1	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0031	328	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0032	494	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0033	494	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0034	488	1	0	1	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0035	219	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0036	494	1	1	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0037	62	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	a0038	174	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A7_chr19_40870439_40887231	0/0	a0001	494	106	16	19	46	5	20	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0002	494	67	19	7	33	0	8	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	1/0	a0003	494	57	2	11	30	3	10	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0004	494	21	0	0	21	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0005	494	20	8	10	0	0	2	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0006	466	20	8	12	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0007	494	19	18	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0008	494	16	1	14	0	0	1	copy fasta	CYP2A7	chr19	40870439	40887231