JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP2A7_chr19_40870439_40887231	0/0	a0009	494	12	0	0	12	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0010	494	9	9	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0011	494	6	4	2	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0012	494	6	2	1	2	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/1	a0013	494	6	0	3	0	2	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0014	494	5	0	1	1	2	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0015	494	3	0	0	2	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0016	494	3	3	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0017	494	3	0	0	3	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0018	494	3	0	0	3	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0019	494	2	0	0	2	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0020	494	2	2	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0021	494	2	0	2	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0022	100	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0023	466	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0024	494	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0025	494	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0026	494	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0027	494	1	0	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0028	369	1	0	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0029	494	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0030	466	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	a0031	494	1	0	1	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2B6_chr19_40986282_41023398	1/0	a0001	491	228	48	28	130	8	13	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/1	a0002	491	130	29	33	43	6	18	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0003	491	21	0	1	17	0	3	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0004	491	17	1	7	0	4	5	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0005	491	12	3	0	8	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0006	491	5	0	4	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0007	491	4	4	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0008	491	3	3	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0009	491	3	3	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0010	491	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0011	491	2	0	2	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0012	491	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0013	491	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0014	491	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0015	491	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0016	491	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0017	491	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0018	491	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0019	491	1	0	0	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0020	491	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	a0021	491	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2C18_chr10_94678729_94741190	1/1	a0001	490	253	70	49	92	15	25	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0002	490	86	9	6	57	1	13	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0003	67	24	7	0	13	0	4	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0004	490	7	0	3	0	2	2	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0005	490	2	2	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0006	490	2	0	0	2	0	0	copy fasta	CYP2C18	chr10	94678729	94741190