Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADCY10_chr1_167804386_167919134	0/0	a0022	1610	1	1	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0023	1610	1	0	0	1	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0024	1610	1	0	0	1	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0025	1610	1	0	0	1	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY1_chr7_45569368_45728116	1/1	a0001	1119	266	70	47	115	8	24	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	a0002	1119	5	0	5	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	a0003	1123	3	0	0	3	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	a0004	1119	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	a0005	1119	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	a0006	1119	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	a0007	1119	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY2_chr5_7391138_7835081	0/0	a0001	711	74	45	21	5	1	2	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	1/1	a0002	1091	53	29	9	7	0	6	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	a0003	1091	6	2	2	0	1	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	a0004	711	4	1	2	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	a0005	711	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	a0006	711	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	a0007	711	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY3_chr2_24814169_24925237	0/0	a0001	1144	172	72	34	48	7	11	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	1/1	a0002	1144	95	11	20	43	4	15	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	a0003	1144	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	a0004	1144	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	a0005	1144	1	0	0	0	1	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	a0006	1144	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	a0007	1144	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY4_chr14_24313359_24340071	1/1	a0001	1077	430	87	71	210	16	44	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0002	1077	2	0	2	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0003	1077	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0004	1077	1	0	0	0	0	1	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0005	1077	1	1	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0006	1077	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0007	1077	1	0	0	0	0	1	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	a0008	1077	1	0	1	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY5_chr3_123277296_123454090	1/1	a0001	1261	248	76	41	85	10	34	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0002	1261	3	0	0	3	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0003	1261	2	0	2	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0004	1261	2	0	0	2	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0005	1261	1	0	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0006	1261	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0007	1261	1	0	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0008	1261	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	a0009	1261	1	0	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY6_chr12_48761194_48794089	1/1	a0001	1168	282	73	54	104	13	36	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0002	1168	9	9	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0003	1168	3	2	0	0	1	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0004	1168	2	0	2	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0005	1168	1	0	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0006	1168	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0007	1168	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0008	1168	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089