JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP2C18_chr10_94678729_94741190	0/0	a0007	490	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0008	490	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0009	419	1	0	0	1	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	a0010	490	1	0	0	1	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C19_chr10_94757681_94860547	0/1	a0001	490	313	85	48	131	15	33	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	1/0	a0002	490	19	0	2	12	1	3	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0003	211	17	0	0	13	0	4	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0004	490	4	0	0	0	0	4	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0005	490	2	0	2	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0006	490	2	1	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0007	490	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0008	490	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0009	490	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0010	490	1	0	0	1	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0011	490	1	0	0	1	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0012	490	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	a0013	35	1	0	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C8_chr10_95031772_95074497	1/1	a0001	490	343	71	51	166	13	40	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0002	490	17	15	1	0	0	1	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0003	490	9	1	7	0	1	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0004	490	2	0	0	0	0	2	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0005	490	1	0	1	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0006	273	1	0	0	1	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0007	490	1	1	0	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0008	490	1	0	0	0	0	1	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	a0009	490	1	0	0	1	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C9_chr10_94933658_94995091	1/1	a0001	490	339	71	51	157	16	42	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0002	490	12	0	2	6	1	3	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0003	490	9	1	7	0	1	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0004	490	5	5	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0005	490	4	4	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0006	490	2	2	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0007	490	1	0	0	0	0	1	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0008	490	1	1	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	a0009	490	1	0	0	1	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2D6_chr22_42121499_42135810	0/0	a0000	0	24	5	5	11	1	2	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0001	497	151	24	30	75	4	18	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/1	a0002	497	83	13	25	25	4	15	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0003	497	64	5	0	58	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0004	497	21	20	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0005	497	16	1	7	0	5	3	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0006	497	11	11	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0007	497	5	1	1	0	3	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0008	497	5	0	5	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0009	497	3	1	1	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0010	497	3	2	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0011	497	2	2	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0012	497	2	0	2	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0013	497	2	0	1	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0014	497	2	0	0	2	0	0	copy fasta	CYP2D6	chr22	42121499	42135810