JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP2D6_chr22_42121499_42135810	0/0	a0015	497	2	2	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0016	497	2	0	0	2	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0017	497	2	0	0	2	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0018	497	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0019	497	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0020	497	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0021	497	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0022	497	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0023	497	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0024	497	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0025	497	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0026	497	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0027	497	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0028	497	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0029	497	1	0	0	0	1	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0030	497	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0031	497	1	0	1	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0032	497	1	0	0	0	0	1	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0033	343	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	a0034	170	1	0	0	1	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2E1_chr10_133522363_133544123	1/1	a0001	493	375	65	59	193	16	40	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	a0002	493	35	33	2	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	a0003	493	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	a0004	493	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	a0005	493	1	0	1	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	a0006	493	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2F1_chr19_41109432_41133381	1/1	a0001	491	167	17	31	94	9	14	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0002	26	113	45	13	35	4	16	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0003	491	21	10	4	0	3	4	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0004	491	17	1	8	5	0	3	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0005	491	17	0	12	1	2	2	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0006	491	9	9	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0007	491	9	0	0	9	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0008	491	4	4	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0009	491	4	4	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0010	491	3	0	0	3	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0011	491	3	3	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0012	491	3	3	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0013	26	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0014	491	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0015	491	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	a0016	491	1	0	0	0	0	1	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2J2_chr1_59888308_59931773	1/1	a0001	502	357	78	67	157	16	37	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	a0002	502	2	0	0	2	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	a0003	502	1	1	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	a0004	502	1	0	0	0	0	1	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	a0005	502	1	1	0	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	a0006	502	1	0	1	0	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	a0007	502	1	0	0	1	0	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2R1_chr11_14872440_14897231	1/1	a0001	501	402	84	72	190	14	40	copy fasta	CYP2R1	chr11	14872440	14897231