JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP2R1_chr11_14872440_14897231	0/0	a0002	501	1	1	0	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	a0003	501	1	1	0	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2S1_chr19_41188219_41212539	1/1	a0001	504	399	80	66	192	16	43	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0002	504	4	0	0	0	0	4	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0003	504	4	2	2	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0004	504	3	3	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0005	504	2	2	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0006	504	2	2	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0007	504	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0008	504	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0009	504	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0010	504	1	0	1	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0011	504	1	0	0	0	0	1	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0012	504	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0013	504	1	0	1	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	a0014	504	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2U1_chr4_107926549_107958461	1/1	a0001	544	370	86	70	154	14	44	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	a0002	544	8	0	0	8	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	a0003	544	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	a0004	544	1	0	1	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	a0005	544	1	0	1	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	a0006	544	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2W1_chr7_978181_994640	1/1	a0001	490	262	64	43	100	14	39	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0002	490	84	7	16	58	1	2	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0003	490	19	3	9	4	1	2	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0004	490	13	13	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0005	490	12	0	3	9	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0006	490	6	6	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0007	490	2	2	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0008	490	2	1	1	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0009	490	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0010	490	1	0	0	0	0	1	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0011	490	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0012	490	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0013	490	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0014	490	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0015	490	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	a0016	490	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP39A1_chr6_46544580_46657818	0/0	a0001	469	114	47	9	43	3	12	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	1/0	a0002	469	100	26	22	37	4	10	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/1	a0003	469	26	4	6	12	1	2	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0004	469	23	0	1	20	0	2	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0005	469	23	12	3	5	0	3	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0006	469	10	0	2	1	2	5	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0007	469	9	0	3	2	0	4	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0008	469	3	0	3	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0009	469	1	0	1	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	a0010	433	1	1	0	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP3A43_chr7_99823013_99871093	1/1	a0001	503	256	31	59	117	10	37	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	a0002	88	37	30	1	0	2	4	copy fasta	CYP3A43	chr7	99823013	99871093