JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP3A43_chr7_99823013_99871093	0/0	a0003	479	19	18	1	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	a0004	503	9	8	1	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	a0005	503	2	2	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	a0006	503	1	0	0	1	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	a0007	479	1	1	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	a0008	503	1	0	0	0	0	1	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A4_chr7_99751967_99789184	1/1	a0001	503	285	84	53	95	9	42	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0002	503	4	0	0	4	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0003	503	4	0	0	4	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0004	503	2	2	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0005	503	2	0	1	0	1	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0006	503	1	0	1	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0007	503	1	1	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0008	503	1	0	0	1	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0009	503	1	0	1	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	a0010	503	1	1	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A5_chr7_99643194_99684996	1/0	a0001	502	270	77	31	117	7	37	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	a0002	347	14	14	0	0	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/1	a0003	502	3	0	0	0	1	1	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	a0004	502	2	0	1	0	0	1	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	a0005	502	1	0	0	1	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	a0006	373	1	1	0	0	0	0	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	a0007	502	1	0	0	0	0	1	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A7_chr7_99700036_99740196	0/1	a0001	503	146	62	10	52	4	17	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	1/0	a0002	503	134	26	26	57	7	17	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	a0003	503	1	0	0	0	1	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	a0004	503	1	0	0	1	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP46A1_chr14_99679298_99732301	1/1	a0001	500	371	97	71	157	16	28	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	a0002	500	2	1	1	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	a0003	92	1	0	0	1	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP4A11_chr1_46924188_46946476	1/1	a0001	519	288	58	52	139	9	28	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0002	519	118	33	15	54	2	14	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0003	519	6	0	0	6	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0004	519	5	0	0	5	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0005	519	2	2	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0006	519	2	0	1	0	1	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0007	66	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0008	178	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0009	519	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0010	519	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0011	519	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0012	519	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	a0013	519	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A22_chr1_47132441_47154727	0/1	a0001	519	122	25	18	69	4	5	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0002	519	85	1	10	67	0	7	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0003	519	84	8	9	49	1	17	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	1/0	a0004	519	49	3	29	0	4	12	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0005	519	41	32	5	0	2	2	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0006	379	15	0	0	14	1	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0007	519	11	0	4	7	0	0	copy fasta	CYP4A22	chr1	47132441	47154727