JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP4A22_chr1_47132441_47154727	0/0	a0008	519	9	9	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0009	519	4	4	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0010	519	2	0	0	0	1	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0011	519	2	2	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0012	519	2	2	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0013	519	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0014	519	1	0	0	0	1	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0015	519	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0016	519	1	0	1	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0017	519	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0018	519	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0019	519	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0020	519	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0021	519	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0022	519	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0023	519	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0024	519	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0025	519	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	a0026	519	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4B1_chr1_46794046_46824413	1/0	a0001	512	169	23	31	84	9	21	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0002	512	88	18	10	49	2	9	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/1	a0003	296	69	5	14	45	1	3	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0004	512	40	30	5	3	0	2	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0005	512	7	6	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0006	512	5	4	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0007	512	5	5	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0008	512	4	0	0	4	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0009	512	3	3	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0010	512	2	0	2	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0011	512	2	1	0	0	0	1	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0012	512	2	2	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0013	512	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0014	512	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0015	512	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	a0016	512	1	1	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4F11_chr19_15907377_15939529	0/1	a0001	524	169	26	23	104	4	11	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0002	524	149	29	33	60	8	19	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	1/0	a0003	524	48	23	10	1	6	7	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0004	524	9	9	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0005	524	2	0	1	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0006	524	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0007	524	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0008	524	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0009	520	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0010	524	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0011	524	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0012	108	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	a0013	524	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F12_chr19_15668087_15702174	0/1	a0001	524	179	11	35	110	9	13	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0002	524	127	29	24	54	5	15	copy fasta	CYP4F12	chr19	15668087	15702174