JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP4F12_chr19_15668087_15702174	0/0	a0003	524	57	27	14	1	1	14	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0004	524	18	9	6	0	1	2	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0005	524	6	6	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0006	524	6	0	0	6	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0007	524	3	0	0	3	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0008	524	2	0	0	2	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0009	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0010	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0011	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0012	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0013	524	1	0	1	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0014	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0015	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0016	524	1	0	0	1	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0017	524	1	0	0	1	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0018	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	a0019	524	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	1/0	a0020	524	1	0	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F22_chr19_15503525_15557317	1/1	a0001	531	349	72	74	135	18	48	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0002	531	17	17	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0003	531	3	3	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0004	531	3	1	0	2	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0005	531	3	3	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0006	531	2	1	1	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0007	531	2	0	0	2	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0008	531	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0009	531	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0010	531	1	0	1	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0011	531	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	a0012	531	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F2_chr19_15873023_15903074	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	1/0	a0001	520	244	43	57	110	13	20	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0002	520	57	3	12	30	2	10	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/1	a0003	520	29	2	7	9	3	7	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0004	520	21	20	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0005	520	14	12	1	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0006	520	7	6	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0007	520	2	2	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0008	520	1	0	1	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0009	520	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0010	520	1	0	0	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0011	520	1	0	0	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	a0012	520	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F3_chr19_15635897_15667825	1/1	a0001	520	336	82	64	135	12	41	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0002	520	64	8	8	39	3	6	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0003	520	5	0	0	5	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0004	520	4	0	0	4	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0005	520	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0006	520	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0007	520	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825