JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP4F3_chr19_15635897_15667825	0/0	a0008	520	1	0	0	1	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0009	520	1	1	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0010	520	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0011	520	1	0	0	0	1	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0012	520	1	1	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0013	520	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0014	520	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0015	520	1	0	0	0	0	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	a0016	520	1	0	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F8_chr19_15610218_15635639	1/1	a0001	520	297	72	46	131	10	36	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0002	520	81	13	22	34	3	9	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0003	520	29	2	8	11	3	5	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0004	520	1	0	0	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0005	520	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0006	520	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0007	411	1	0	0	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	a0008	520	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4V2_chr4_186186567_186218463	1/0	a0001	525	146	17	27	94	2	5	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/1	a0002	525	127	20	18	57	6	25	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0003	525	78	20	19	33	4	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0004	525	74	18	14	30	4	8	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0005	525	6	6	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0006	525	5	5	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0007	525	4	2	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0008	525	3	0	1	0	2	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0009	525	3	0	0	1	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0010	525	2	0	0	2	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0011	525	2	2	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0012	522	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	a0013	525	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4X1_chr1_47018669_47055751	1/1	a0001	509	346	89	70	135	14	36	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	a0002	509	1	0	0	1	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	a0003	509	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	a0004	509	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	a0005	509	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4Z1_chr1_47062231_47123318	1/1	a0001	505	309	84	70	112	11	30	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	a0002	505	3	0	0	3	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	a0003	505	2	2	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	a0004	505	1	1	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	a0005	505	1	0	0	0	1	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	a0006	505	1	1	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	a0007	505	1	0	0	1	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP51A1_chr7_92107153_92139477	1/1	a0001	509	385	91	68	176	10	38	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	a0002	509	2	0	0	2	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	a0003	509	2	2	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	a0004	509	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	a0005	509	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	a0006	509	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP7A1_chr8_58485178_58505163	1/1	a0001	504	431	92	71	202	16	48	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	a0002	504	16	3	0	13	0	0	copy fasta	CYP7A1	chr8	58485178	58505163