JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYP7A1_chr8_58485178_58505163	0/0	a0003	504	4	0	0	4	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	a0004	504	3	3	0	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	a0005	504	1	0	1	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	a0006	504	1	0	0	1	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7B1_chr8_64585851_64803737	1/1	a0001	506	240	64	42	89	11	32	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	a0002	506	16	14	2	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	a0003	47	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	a0004	506	1	0	0	0	1	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP8B1_chr3_42867192_42880879	0/1	a0001	501	360	73	68	159	14	45	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	1/0	a0002	501	9	7	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	a0003	501	8	8	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	a0004	501	7	6	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	a0005	501	1	0	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	a0006	501	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	a0007	501	1	0	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	a0008	501	1	0	0	0	0	1	copy fasta	CYP8B1	chr3	42867192	42880879
CYREN_chr7_135160785_135175707	1/1	a0001	157	402	90	81	170	12	47	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	a0002	157	1	0	1	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	a0003	157	1	1	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	a0004	157	1	0	0	0	0	1	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	a0005	157	1	1	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYRIA_chr2_16544459_16670834	1/1	a0001	323	290	94	48	94	16	36	copy fasta	CYRIA	chr2	16544459	16670834
CYRIB_chr8_129834593_130021560	1/1	a0001	324	288	88	58	106	8	26	copy fasta	CYRIB	chr8	129834593	130021560
CYS1_chr2_10051473_10085411	1/1	a0001	158	263	59	62	98	15	27	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0002	158	70	18	7	36	1	8	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0003	158	62	18	6	29	0	9	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0004	158	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0005	158	1	0	0	1	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0006	158	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0007	158	1	0	1	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	a0008	158	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYSLTR1_chrX_78266468_78332611	1/0	a0001	337	236	48	44	109	11	23	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	a0002	337	2	2	0	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	a0003	32	1	0	0	1	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	a0004	48	1	0	1	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR2_chr13_48648929_48716226	1/1	a0001	346	287	62	54	126	7	36	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0002	346	10	8	2	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0003	346	7	7	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0004	346	3	3	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0005	346	2	2	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0006	346	2	0	0	0	1	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0007	346	2	0	0	2	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0008	346	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0009	346	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0010	346	1	1	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0011	346	1	1	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	a0012	346	1	0	0	0	0	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSRT1_chr9_137220174_137231315	0/1	a0001	144	338	74	75	143	16	29	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	1/0	a0002	144	50	20	6	10	2	11	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	a0003	144	2	2	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315