JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CYSRT1_chr9_137220174_137231315	0/0	a0004	144	1	0	1	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	a0005	144	1	1	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	a0006	144	1	0	0	1	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	a0007	144	1	1	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSTM1_chr5_140170188_140248789	1/1	a0001	97	324	76	58	146	10	32	copy fasta	CYSTM1	chr5	140170188	140248789
CYTH1_chr17_78669048_78787273	1/1	a0001	398	378	88	60	178	12	38	copy fasta	CYTH1	chr17	78669048	78787273
CYTH2_chr19_48464369_48487314	1/1	a0001	399	365	90	72	157	8	36	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	a0002	399	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH3_chr7_6156779_6277624	1/1	a0001	399	348	88	68	152	4	34	copy fasta	CYTH3	chr7	6156779	6277624
CYTH4_chr22_37277508_37320341	1/1	a0001	394	393	90	69	181	14	37	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	a0002	394	7	7	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	a0003	394	2	1	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	a0004	394	1	0	0	0	0	1	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	a0005	394	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTIP_chr2_157409619_157449089	1/1	a0001	359	307	88	70	92	14	41	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	a0002	359	7	0	0	6	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	a0003	359	3	0	0	2	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	a0004	359	1	0	0	0	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	a0005	359	1	0	0	1	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	a0006	359	1	0	0	1	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTL1_chr4_5009586_5024458	1/1	a0001	136	437	96	78	204	14	43	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	a0002	136	6	0	5	0	0	1	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	a0003	136	3	0	1	0	0	2	copy fasta	CYTL1	chr4	5009586	5024458
CYYR1_chr21_26461216_26578286	1/1	a0001	155	303	79	68	98	18	38	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	a0002	155	6	6	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	a0003	155	4	4	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	a0004	155	2	0	2	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	a0005	155	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CZIB_chr1_53209099_53225634	1/1	a0001	160	432	96	72	201	17	44	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	a0002	160	2	0	0	2	0	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	a0003	160	1	0	0	0	1	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	a0004	160	1	0	0	1	0	0	copy fasta	CZIB	chr1	53209099	53225634
D2HGDH_chr2_241729630_241773811	1/1	a0001	521	170	28	33	80	6	21	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0002	521	104	26	22	46	4	6	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0003	521	45	8	12	15	3	7	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0004	521	26	13	3	7	0	3	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0005	521	23	6	2	7	1	7	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0006	521	15	0	3	12	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0007	521	8	6	0	2	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0008	521	4	4	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0009	521	3	3	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0010	521	3	0	0	3	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0011	380	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0012	521	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0013	521	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0014	521	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0015	521	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0016	521	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0017	521	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0018	521	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811