JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
D2HGDH_chr2_241729630_241773811	0/0	a0019	521	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0020	521	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	a0021	521	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
DAAM1_chr14_59183667_59376403	1/1	a0001	1068	288	69	66	97	14	40	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	a0002	1068	7	6	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	a0003	1068	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	a0004	1068	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	a0005	1068	1	0	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM2_chr6_39787376_39909869	1/1	a0001	1068	274	80	49	105	6	32	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0002	1068	6	0	0	5	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0003	1068	4	4	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0004	1068	2	1	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0005	1068	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0006	1068	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0007	1068	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0008	1068	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0009	1068	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0010	1068	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0011	1068	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0012	1068	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0013	1068	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0014	1068	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0015	1068	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0016	1068	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0017	1068	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	a0018	1068	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAB1_chr1_56989778_57429060	1/1	a0001	555	134	67	32	18	2	13	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	a0002	555	2	2	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	a0003	555	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	a0004	555	1	0	0	0	0	1	copy fasta	DAB1	chr1	56989778	57429060
DAB2IP_chr9_121646634_121790530	1/1	a0001	1189	195	61	38	69	9	16	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0002	1189	8	8	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0003	1189	5	5	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0004	1189	4	0	0	4	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0005	1189	4	4	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0006	1189	2	2	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0007	1189	2	1	0	0	1	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0008	1189	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0009	1189	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0010	1189	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	a0011	1189	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2_chr5_39366677_39429980	1/0	a0001	770	318	64	62	146	12	33	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/1	a0002	770	50	3	13	26	0	7	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0003	770	28	21	2	5	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0004	770	6	6	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0005	770	4	3	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0006	770	2	0	0	2	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0007	770	2	2	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0008	770	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0009	770	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980