Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADCY6_chr12_48761194_48794089	0/0	a0009	1168	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0010	1168	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0011	1168	1	0	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	a0012	1168	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY7_chr16_50261551_50323135	1/1	a0001	1080	318	92	70	101	16	37	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0002	1080	4	0	0	4	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0003	1080	3	0	0	3	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0004	1080	3	0	1	0	0	2	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0005	1080	3	0	0	3	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0006	359	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0007	1080	1	0	0	0	0	1	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0008	1080	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0009	1080	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0010	1080	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0011	1080	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	a0012	1080	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY8_chr8_130775301_131045909	1/1	a0001	1251	241	68	51	88	10	22	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	a0002	1251	3	0	3	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	a0003	1251	2	0	0	0	0	2	copy fasta	ADCY8	chr8	130775301	131045909
ADCY9_chr16_3957653_4121442	1/0	a0001	1353	214	71	31	80	4	27	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0002	1353	85	13	21	43	4	4	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/1	a0003	1353	6	0	2	0	1	2	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0004	1353	3	3	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0005	1353	2	2	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0006	1353	2	1	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0007	1353	1	0	0	0	1	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0008	1353	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0009	1353	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0010	1353	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0011	1353	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0012	1353	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0013	1353	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	a0014	1353	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCYAP1R1_chr7_31047308_31116474	1/1	a0001	468	319	79	66	124	10	38	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	a0002	468	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	a0003	468	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	a0004	468	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1_chr18_899871_917172	1/1	a0001	176	425	88	77	207	14	37	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	a0002	176	55	10	11	21	4	9	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	a0003	176	5	0	0	5	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	a0004	176	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	a0005	176	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	a0006	176	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADD1_chr4_2838844_2935062	1/1	a0001	799	228	71	55	64	12	24	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0002	799	74	5	12	47	2	8	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0003	799	11	11	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0004	799	2	0	1	0	0	1	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0005	799	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0006	799	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0007	799	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062