JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DAB2_chr5_39366677_39429980	0/0	a0010	770	1	0	1	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	a0011	770	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DACH1_chr13_71432966_71872204	1/1	a0001	706	54	29	10	4	0	9	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	a0002	708	37	31	3	2	0	1	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	a0003	705	6	6	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	a0004	710	3	2	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	a0005	707	2	2	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH2_chrX_86143451_86837602	0/0	a0001	599	164	54	23	67	4	16	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	a0002	599	1	0	0	1	0	0	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	a0003	599	1	0	0	0	1	0	copy fasta	DACH2	chrX	86143451	86837602
DACT1_chr14_58632962_58653321	0/0	a0001	799	176	27	21	105	5	18	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0002	799	93	27	26	32	4	4	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0003	799	85	12	14	41	3	15	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0004	799	10	10	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0005	799	9	5	1	0	1	2	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0006	799	3	3	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0007	799	3	3	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0008	799	2	0	0	2	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0009	799	1	0	0	0	1	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0010	799	1	0	0	1	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0011	799	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0012	799	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0013	799	1	0	0	0	0	1	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0014	799	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	a0015	799	1	0	0	1	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT2_chr6_168301904_168324777	1/1	a0001	774	223	20	46	122	13	20	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0002	774	152	30	33	64	5	20	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0003	778	23	0	1	19	0	3	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0004	774	15	13	2	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0005	778	13	13	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0006	774	7	0	0	7	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0007	774	6	5	1	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0008	778	5	4	0	0	0	1	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0009	778	4	4	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0010	774	4	0	4	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0011	774	3	1	0	2	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0012	778	3	3	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0013	774	2	0	0	2	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0014	774	2	2	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0015	774	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0016	774	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0017	774	1	0	0	0	0	1	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0018	774	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0019	774	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0020	774	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0021	497	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0022	774	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0023	774	1	0	1	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0024	774	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0025	774	1	0	0	0	0	1	copy fasta	DACT2	chr6	168301904	168324777