JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DACT2_chr6_168301904_168324777	0/0	a0026	774	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0027	774	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	a0028	778	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT3_chr19_46642551_46666182	1/1	a0001	629	448	89	82	212	16	47	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0002	629	3	2	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0003	629	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0004	629	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0005	629	1	0	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0006	629	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0007	629	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0008	629	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0009	629	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0010	629	1	0	0	0	0	1	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	a0011	629	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DAD1_chr14_22559907_22594224	1/1	a0001	113	386	90	74	156	18	46	copy fasta	DAD1	chr14	22559907	22594224
DAG1_chr3_49465267_49540615	0/1	a0001	895	216	69	43	55	18	30	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	1/0	a0002	895	10	9	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	a0003	895	5	5	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	a0004	895	2	2	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	a0005	895	2	0	2	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	a0006	895	1	0	1	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	a0007	895	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	a0008	895	1	0	0	1	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAGLA_chr11_61675391_61752001	1/1	a0001	1042	251	53	62	85	13	36	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0002	1042	75	26	1	41	1	6	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0003	1042	8	7	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0004	1042	2	0	1	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0005	1042	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0006	1042	1	0	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0007	1042	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	a0008	1042	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLB_chr7_6404129_6452954	1/1	a0001	672	275	77	48	104	11	33	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0002	672	64	6	10	41	2	5	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0003	672	23	5	1	13	1	3	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0004	672	5	5	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0005	672	5	0	5	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0006	672	3	0	3	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0007	672	1	0	1	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0008	672	1	0	0	0	0	1	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0009	672	1	0	0	1	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0010	672	1	1	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	a0011	672	1	0	0	1	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DALRD3_chr3_49010488_49023580	0/1	a0001	543	228	78	43	68	10	28	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	1/0	a0002	543	24	9	5	0	6	3	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	a0003	543	3	0	0	2	0	1	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	a0004	543	1	1	0	0	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	a0005	543	1	0	1	0	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	a0006	543	1	0	1	0	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DAND5_chr19_12964576_12979760	1/1	a0001	189	395	94	76	159	17	47	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	a0002	189	1	0	0	1	0	0	copy fasta	DAND5	chr19	12964576	12979760