JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DAND5_chr19_12964576_12979760	0/0	a0003	189	1	0	0	0	1	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	a0004	189	1	0	0	0	0	1	copy fasta	DAND5	chr19	12964576	12979760
DAOA_chr13_105461045_105496034	1/0	a0001	153	242	88	51	68	7	27	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/1	a0002	153	162	8	27	102	7	17	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	a0003	153	8	0	0	8	0	0	copy fasta	DAOA	chr13	105461045	105496034
DAO_chr12_108875092_108906043	1/1	a0001	347	387	94	62	174	16	39	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	a0002	347	1	0	0	0	0	1	copy fasta	DAO	chr12	108875092	108906043
DAP3_chr1_155684091_155744010	1/1	a0001	398	276	89	44	101	10	30	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	a0002	397	11	0	0	9	0	2	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	a0003	398	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAPK1_chr9_87492867_87713634	0/1	a0001	1430	139	21	28	63	5	21	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	1/0	a0002	1430	65	28	15	11	5	5	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	a0003	1430	18	18	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	a0004	1430	8	7	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	a0005	1430	3	3	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	a0006	1430	2	2	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	a0007	1430	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK2_chr15_63902036_64051485	1/1	a0001	370	208	85	46	25	14	36	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	a0002	370	4	4	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	a0003	370	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	a0004	370	1	0	0	1	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK3_chr19_3953453_3976099	1/1	a0001	454	358	88	81	129	16	42	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	a0002	454	4	0	0	4	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	a0003	460	1	0	0	1	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	a0004	454	1	0	1	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPL1_chr2_158790317_158820990	0/1	a0001	107	221	56	28	101	8	27	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	1/0	a0002	107	108	33	23	35	4	12	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	a0003	107	28	1	13	3	5	6	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	a0004	104	1	0	0	0	1	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	a0005	107	1	0	0	0	0	1	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	a0006	107	1	0	0	1	0	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPP1_chr4_99811827_99875190	1/1	a0001	280	364	86	73	158	12	33	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	a0002	280	1	0	0	0	0	1	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	a0003	280	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAP_chr5_10674230_10766234	1/1	a0001	102	372	82	68	168	12	40	copy fasta	DAP	chr5	10674230	10766234
DARS1_chr2_135900881_135990626	1/1	a0001	501	371	83	72	170	6	38	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	a0002	501	3	3	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	a0003	501	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	a0004	501	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	a0005	501	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	a0006	501	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS2_chr1_173819673_173863546	1/0	a0001	645	331	76	49	155	14	36	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	a0002	645	8	8	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	a0003	645	2	2	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	a0004	645	1	0	0	1	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/1	a0005	645	1	0	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	a0006	645	1	0	1	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DAW1_chr2_227866631_227929344	1/1	a0001	415	284	54	48	144	8	28	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0002	415	36	15	12	0	4	5	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0003	415	12	12	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344