JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DAW1_chr2_227866631_227929344	0/0	a0004	415	2	0	0	2	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0005	415	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0006	415	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0007	415	1	0	0	0	0	1	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0008	415	1	1	0	0	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0009	415	1	0	0	1	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	a0010	415	1	0	0	1	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAXX_chr6_33313558_33327959	0/1	a0001	740	361	97	64	149	14	36	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	a0002	739	5	0	0	5	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	a0003	740	5	0	2	1	0	2	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	a0004	740	2	2	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	a0005	740	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	a0006	748	1	0	0	1	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAZ1_chrY_23124355_23204008	1/1	a0001	744	58	14	12	20	2	8	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	a0002	744	2	0	0	2	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	a0003	414	1	0	0	1	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	a0004	579	1	0	0	1	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	a0005	418	1	0	0	0	0	1	copy fasta	DAZ1	chrY	23124355	23204008
DAZ2_chrY_23214533_23296356	0/0	a0001	534	22	1	4	5	3	9	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0002	582	13	12	1	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0003	630	6	0	5	0	1	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0004	654	2	0	1	0	0	1	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/1	a0005	510	2	0	0	0	0	1	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	1/0	a0006	654	2	0	0	0	0	1	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0007	283	1	0	0	1	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0008	534	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0009	582	1	0	0	1	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0010	630	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0011	462	1	0	1	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0012	486	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	a0013	630	1	1	0	0	0	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ3_chrY_24758069_24818393	1/0	a0001	438	19	3	6	5	2	2	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0002	366	10	10	0	0	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0003	318	6	0	1	4	1	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0004	390	4	1	2	1	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0005	342	2	0	0	2	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0006	438	2	0	0	1	0	1	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0007	366	1	0	0	1	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	a0008	438	1	0	0	0	1	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ4_chrY_24828919_24912040	0/0	a0001	627	10	8	2	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0002	603	9	1	0	5	0	3	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0003	579	6	0	1	1	2	2	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0004	699	6	0	4	0	1	1	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0005	555	2	0	0	2	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0006	603	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0007	603	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0008	531	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0009	603	1	0	1	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	1/0	a0010	723	1	0	0	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0011	603	1	0	0	1	0	0	copy fasta	DAZ4	chrY	24828919	24912040