JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DAZ4_chrY_24828919_24912040	0/0	a0012	651	1	0	1	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZ4_chrY_24828919_24912040	0/0	a0013	723	1	1	0	0	0	0	copy fasta	DAZ4	chrY	24828919	24912040
DAZAP1_chr19_1402586_1440684	1/1	a0001	407	373	96	74	140	16	45	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	a0002	407	1	0	0	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP2_chr12_51233826_51248933	1/1	a0001	168	435	95	86	192	18	42	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	a0002	168	2	2	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	a0003	168	1	1	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZL_chr3_16581792_16610423	1/1	a0001	295	412	92	77	195	12	34	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	a0002	295	33	2	5	19	2	5	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	a0003	295	1	0	0	0	0	1	copy fasta	DAZL	chr3	16581792	16610423
DBF4B_chr17_44703665_44757264	1/1	a0001	615	275	81	56	102	10	24	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	a0002	615	8	6	2	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	a0003	615	2	2	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	a0004	615	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	a0005	615	1	1	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	a0006	615	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4_chr7_87871493_87914553	1/1	a0001	674	243	63	46	96	12	24	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0002	674	39	14	7	16	0	2	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0003	674	3	0	0	3	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0004	674	2	0	2	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0005	674	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0006	674	1	0	1	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0007	674	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0008	674	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	a0009	271	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBH_chr9_133631363_133664329	1/0	a0001	617	295	55	67	126	13	33	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/1	a0002	617	53	17	3	29	1	2	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0003	617	27	15	2	2	0	8	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0004	617	9	8	1	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0005	617	2	2	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0006	617	2	0	0	2	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0007	617	2	0	1	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0008	617	2	0	0	2	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0009	617	2	0	1	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0010	617	1	0	0	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0011	617	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0012	617	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0013	617	1	0	1	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0014	617	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0015	617	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0016	617	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	a0017	617	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBI_chr2_119361977_119377543	1/1	a0001	87	416	90	79	180	18	47	copy fasta	DBI	chr2	119361977	119377543
DBI_chr2_119361977_119377543	0/0	a0002	87	5	0	4	0	0	1	copy fasta	DBI	chr2	119361977	119377543
DBI_chr2_119361977_119377543	0/0	a0003	87	1	0	1	0	0	0	copy fasta	DBI	chr2	119361977	119377543
DBN1_chr5_177451610_177478634	0/0	a0001	695	200	39	43	88	6	24	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/1	a0002	695	135	51	28	34	6	15	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	1/0	a0003	695	2	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0004	695	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0005	695	1	0	0	0	0	1	copy fasta	DBN1	chr5	177451610	177478634