JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DBN1_chr5_177451610_177478634	0/0	a0006	695	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0007	695	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0008	695	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0009	695	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0010	695	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0011	695	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	a0012	695	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBNDD1_chr16_89999871_90024456	1/1	a0001	158	409	98	78	169	14	48	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	a0002	158	2	2	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	a0003	158	1	0	0	1	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD2_chr20_45403289_45415607	0/1	a0001	161	312	85	59	121	11	35	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	1/0	a0002	161	103	3	19	70	3	7	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	a0003	161	1	0	0	1	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNL_chr7_44039702_44074456	1/1	a0001	430	374	90	75	153	14	40	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	a0002	430	4	4	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	a0003	430	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	a0004	430	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBP_chr19_48625030_48642379	1/1	a0001	325	386	94	79	166	11	34	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	a0002	325	1	0	0	0	1	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	a0003	325	1	0	1	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBR1_chr3_138155988_138179921	1/1	a0001	544	361	92	59	158	14	36	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	a0002	544	3	0	0	3	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	a0003	544	2	2	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	a0004	544	1	0	0	1	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	a0005	544	1	0	0	1	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	a0006	544	1	0	0	1	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	a0007	544	1	0	1	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBT_chr1_100181919_100254834	0/1	a0001	482	174	48	37	58	8	22	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	1/0	a0002	482	31	21	4	4	1	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	a0003	482	10	10	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	a0004	482	3	0	1	0	1	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	a0005	482	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	a0006	482	1	0	0	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	a0007	482	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBX1_chr11_20151155_20165475	1/1	a0001	343	441	67	75	231	18	48	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	a0002	343	17	16	1	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	a0003	342	15	14	1	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	a0004	343	3	0	3	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	a0005	343	3	3	0	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	a0006	343	1	0	0	1	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX2_chr12_45009672_45056099	0/0	a0001	339	299	61	54	154	5	25	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	1/1	a0002	339	111	33	22	44	5	5	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	a0003	339	3	3	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	a0004	339	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	a0005	339	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	a0006	339	1	1	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DCAF10_chr9_37795797_37872664	1/1	a0001	559	354	77	72	147	12	44	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	a0002	559	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	a0003	559	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF11_chr14_24109777_24130242	1/0	a0001	546	224	56	29	111	7	20	copy fasta	DCAF11	chr14	24109777	24130242