JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCAF11_chr14_24109777_24130242	0/1	a0002	546	181	33	37	83	7	20	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0003	546	5	5	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0004	546	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0005	546	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0006	546	1	0	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0007	546	1	0	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0008	546	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	a0009	546	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF12L1_chrX_126544383_126557814	1/1	a0001	463	233	60	45	91	10	25	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0002	463	41	15	3	20	1	2	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0003	463	2	2	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0004	463	1	0	0	0	0	1	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0005	311	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0006	463	1	0	1	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0007	440	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0008	355	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0009	463	1	1	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0010	463	1	0	1	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	a0011	54	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L2_chrX_126158499_126171289	0/0	a0001	463	182	62	25	78	5	12	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	1/1	a0002	463	134	15	29	65	8	15	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	a0003	463	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	a0004	156	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	a0005	463	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	a0006	463	1	0	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12_chr9_34081387_34131698	1/1	a0001	453	280	94	59	76	15	34	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	a0002	453	89	1	21	52	3	12	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	a0003	453	1	1	0	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF13_chr8_103410386_103448453	1/0	a0001	445	230	75	42	77	11	24	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/1	a0002	445	111	17	25	55	5	8	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	a0003	445	1	0	1	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF15_chr19_13947509_13966449	1/1	a0001	600	205	25	44	102	10	22	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0002	539	132	25	26	52	6	23	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0003	600	42	39	2	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0004	539	9	0	0	9	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0005	516	7	7	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0006	539	2	2	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0007	539	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0008	600	1	0	0	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	a0009	539	1	0	0	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF16_chr4_17795655_17815757	1/1	a0001	216	371	69	73	181	8	38	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	a0002	216	50	23	1	20	0	6	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	a0003	216	2	2	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	a0004	216	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF17_chr2_171429226_171490052	1/1	a0001	520	338	84	58	153	12	29	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	a0002	520	20	5	1	11	0	3	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	a0003	520	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	a0004	520	1	0	1	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF1_chr3_51392842_51505015	1/1	a0001	1507	271	57	50	130	6	26	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	a0002	1507	1	0	0	1	0	0	copy fasta	DCAF1	chr3	51392842	51505015