JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCAF1_chr3_51392842_51505015	0/0	a0003	1507	1	0	0	1	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	a0004	1507	1	1	0	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF4L1_chr4_41976756_41991465	1/1	a0001	396	314	98	62	102	10	40	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L2_chr8_87865747_87879015	1/1	a0001	395	421	85	72	204	16	42	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	a0002	395	5	5	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	a0003	104	2	0	0	2	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	a0004	395	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	a0005	395	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4_chr14_72921464_72964703	1/0	a0001	495	329	78	59	147	8	36	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0002	495	44	4	7	31	0	2	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0003	495	6	0	0	6	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0004	495	6	0	2	2	1	1	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0005	495	2	2	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0006	495	2	0	0	0	1	1	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0007	495	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0008	495	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/1	a0009	495	1	0	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0010	495	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0011	495	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0012	495	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	a0013	495	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF5_chr14_69045881_69158119	1/1	a0001	942	241	91	55	41	14	38	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	a0002	942	1	0	0	1	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	a0003	942	1	0	1	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	a0004	942	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF6_chr1_167931683_168080836	1/1	a0001	951	209	75	36	75	7	14	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	a0002	951	41	4	8	21	3	5	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	a0003	951	9	9	0	0	0	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	a0004	951	5	0	3	0	1	1	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	a0005	951	1	0	1	0	0	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	a0006	951	1	0	0	0	1	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF7_chr17_63545477_63599266	1/1	a0001	342	261	86	48	79	14	32	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	a0002	342	1	0	0	1	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF8L1_chrX_27972992_27986449	1/0	a0001	600	277	73	52	108	13	30	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0002	600	2	1	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0003	600	1	0	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0004	600	1	0	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/1	a0005	600	1	0	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0006	600	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0007	600	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0008	600	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0009	600	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0010	600	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0011	600	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0012	600	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	a0013	600	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L2_chrX_27585344_27754942	1/0	a0001	631	56	8	25	11	5	6	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0002	628	50	12	6	29	0	3	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0003	630	37	6	4	26	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0004	629	26	9	2	11	1	3	copy fasta	DCAF8L2	chrX	27585344	27754942