JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCAF8L2_chrX_27585344_27754942	0/0	a0005	628	20	2	5	10	2	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/1	a0006	632	19	5	2	6	1	4	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0007	627	13	5	2	6	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0008	634	7	7	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0009	631	4	0	0	4	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0010	631	4	0	3	0	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0011	629	4	1	2	0	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0012	630	3	3	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0013	633	3	1	1	1	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0014	632	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0015	634	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0016	630	2	0	2	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0017	633	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0018	632	1	0	0	1	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0019	627	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0020	632	1	0	1	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0021	631	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0022	626	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0023	625	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0024	164	1	0	0	1	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	a0025	632	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8_chr1_160210720_160267549	1/1	a0001	597	332	87	63	140	10	30	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	a0002	593	2	0	1	0	1	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	a0003	597	1	0	0	0	1	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	a0004	597	1	1	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAKD_chr17_45018344_45056632	1/1	a0001	231	386	90	78	154	18	44	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0002	231	13	0	3	7	0	3	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0003	231	3	0	0	3	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0004	231	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0005	231	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0006	231	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0007	231	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0008	231	1	0	1	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	a0009	231	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCANP1_chr5_135439214_135452348	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0001	116	264	81	46	107	7	23	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	1/1	a0002	244	169	8	37	88	7	27	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0003	244	13	0	0	13	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0004	244	3	3	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0005	116	2	2	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0006	116	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0007	116	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0008	244	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	a0009	244	1	0	1	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCBLD1_chr6_117477674_117554797	1/1	a0001	715	288	65	48	132	7	34	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0002	715	27	0	8	19	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0003	715	23	4	7	6	3	3	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0004	715	14	13	1	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0005	714	6	6	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0006	715	5	0	0	5	0	0	copy fasta	DCBLD1	chr6	117477674	117554797