JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCBLD1_chr6_117477674_117554797	0/0	a0007	715	3	0	0	3	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0008	160	1	0	0	1	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0009	715	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0010	715	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	a0011	715	1	0	0	0	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD2_chr3_98790941_98906695	1/1	a0001	775	294	79	50	106	15	42	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0002	775	14	0	1	13	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0003	775	8	0	0	4	1	3	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0004	775	5	4	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0005	775	2	2	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0006	59	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0007	775	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0008	775	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0009	775	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0010	775	1	0	0	0	0	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0011	775	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	a0012	775	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCC_chr18_52335197_53540899	0/0	a0001	1447	58	26	18	8	2	4	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0002	1447	43	13	9	12	4	5	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0003	1447	6	6	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0004	1447	2	0	0	0	0	2	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0005	1447	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0006	1447	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0007	1447	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0008	1447	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	a0009	1447	1	0	0	0	0	1	copy fasta	DCC	chr18	52335197	53540899
DCDC1_chr11_30858603_31374739	0/1	a0001	1786	70	21	11	28	2	7	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	1/0	a0002	1786	22	6	8	2	1	4	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0003	1786	13	11	2	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0004	1786	9	1	2	5	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0005	1786	7	7	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0006	1786	6	1	3	0	1	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0007	1786	2	1	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0008	1786	2	2	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0009	1786	2	2	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0010	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0011	1786	1	0	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0012	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0013	1786	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0014	1786	1	0	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0015	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0016	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0017	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0018	1786	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0019	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0020	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0021	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0022	1147	1	0	0	0	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0023	1786	1	0	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0024	1786	1	0	0	0	0	1	copy fasta	DCDC1	chr11	30858603	31374739