Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADD1_chr4_2838844_2935062	0/0	a0008	799	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	a0009	799	1	0	0	0	0	1	copy fasta	ADD1	chr4	2838844	2935062
ADD2_chr2_70651784_70773200	1/1	a0001	726	276	63	57	96	14	44	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0002	726	10	7	3	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0003	726	5	5	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0004	726	4	4	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0005	726	2	2	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0006	726	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0007	726	1	0	0	0	0	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0008	726	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0009	726	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	a0010	726	1	1	0	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD3_chr10_110002984_110140565	1/1	a0001	706	263	67	30	133	2	29	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0002	706	9	9	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0003	706	6	6	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0004	706	3	2	1	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0005	706	1	0	0	1	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0006	706	1	0	0	0	0	1	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0007	706	1	0	1	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0008	706	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0009	706	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0010	706	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADD3_chr10_110002984_110140565	0/0	a0011	706	1	1	0	0	0	0	copy fasta	ADD3	chr10	110002984	110140565
ADGB_chr6_146593972_146820462	0/0	a0001	1667	85	3	12	63	4	3	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	1/0	a0002	1667	38	1	13	13	1	9	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0003	1667	30	15	4	9	0	2	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0004	1667	23	5	7	11	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/1	a0005	1667	22	9	4	5	1	2	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0006	1667	14	0	4	7	0	3	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0007	1667	8	8	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0008	1667	7	4	0	1	2	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0009	1667	7	6	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0010	1667	5	1	2	0	1	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0011	1667	5	5	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0012	1667	3	3	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0013	1667	2	2	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0014	1667	2	2	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0015	1667	2	0	1	1	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0016	1667	2	2	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0017	1667	2	0	0	0	0	2	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0018	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0019	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0020	1667	1	0	0	1	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0021	1667	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0022	1667	1	0	0	0	0	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0023	1667	1	0	1	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0024	1667	1	0	0	0	0	1	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0025	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0026	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0027	1667	1	0	0	1	0	0	copy fasta	ADGB	chr6	146593972	146820462