JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCDC1_chr11_30858603_31374739	0/0	a0025	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0026	1786	1	0	0	0	0	1	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0027	1786	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	a0028	1786	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC2B_chr1_32204089_32221192	1/1	a0001	349	395	92	64	185	13	39	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0002	349	1	0	0	0	0	1	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0003	349	1	0	0	1	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0004	349	1	1	0	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0005	349	1	1	0	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0006	349	1	0	1	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0007	105	1	0	1	0	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0008	349	1	0	0	1	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0009	349	1	0	0	1	0	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2B_chr1_32204089_32221192	0/0	a0010	349	1	0	0	0	1	0	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2C_chr2_3698575_3853008	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	1/1	a0001	364	255	69	54	97	8	25	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	a0002	364	56	18	4	30	2	2	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	a0003	364	4	0	3	0	0	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	a0004	364	4	0	0	4	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	a0005	364	3	3	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	a0006	364	1	0	1	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2_chr6_24166755_24363059	0/0	a0001	476	82	6	22	41	0	13	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0002	476	79	28	12	24	2	13	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0003	476	42	37	5	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0004	476	8	0	2	2	0	4	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0005	476	2	2	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0006	476	1	0	1	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0007	476	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	a0008	476	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCD_chr12_54639589_54653365	1/1	a0001	110	423	98	72	194	13	44	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	a0002	110	2	0	0	2	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	a0003	110	2	2	0	0	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	a0004	110	1	0	0	0	1	0	copy fasta	DCD	chr12	54639589	54653365
DCHS1_chr11_6616330_6660809	1/1	a0001	3298	124	34	28	38	3	19	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0002	3298	111	13	23	61	2	12	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0003	3299	46	2	9	23	1	11	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0004	3298	16	13	2	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0005	3298	10	9	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0006	3298	8	0	5	0	3	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0007	3298	5	0	0	5	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0008	3299	5	0	2	3	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0009	3298	4	3	0	0	1	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0010	3298	3	0	0	3	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0011	3298	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0012	3298	3	3	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0013	3298	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0014	3298	2	0	2	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0015	3298	2	0	0	0	0	2	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0016	3298	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0017	3298	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809