JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCHS1_chr11_6616330_6660809	0/0	a0018	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0019	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0020	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0021	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0022	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0023	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0024	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0025	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0026	3298	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0027	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0028	3298	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0029	3298	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0030	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0031	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0032	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0033	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0034	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0035	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0036	3298	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0037	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0038	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0039	3299	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0040	3299	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0041	3299	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0042	3299	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	a0043	3298	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS2_chr4_154226742_154496799	0/0	a0001	3371	15	2	3	7	1	2	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0002	3371	12	0	5	2	0	5	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0003	3371	5	0	5	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0004	3371	5	1	3	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0005	3371	5	0	2	0	0	3	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/1	a0006	3371	4	0	2	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0007	3371	4	0	2	0	1	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0008	3371	4	1	1	2	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0009	3371	4	0	0	3	1	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0010	3371	3	0	1	1	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0011	3371	3	3	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0012	3371	3	1	0	2	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0013	3371	3	3	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0014	3371	3	0	0	3	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0015	3371	3	0	0	1	0	2	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0016	3371	3	0	0	2	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0017	3371	3	0	1	1	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0018	3371	3	0	2	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0019	3371	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0020	3371	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0021	3371	2	1	0	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0022	3371	2	0	0	2	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0023	3371	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0024	3371	2	0	0	2	0	0	copy fasta	DCHS2	chr4	154226742	154496799