JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCHS2_chr4_154226742_154496799	0/0	a0025	3371	2	0	1	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0026	3371	2	1	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0027	3371	2	0	0	2	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0028	3371	2	0	2	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0029	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0030	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0031	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0032	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0033	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0034	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0035	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0036	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0037	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0038	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0039	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0040	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0041	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0042	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0043	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0044	3371	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0045	3371	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0046	3371	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0047	3371	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0048	3371	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0049	3371	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0050	3372	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0051	3371	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0052	3371	1	0	0	0	1	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0053	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0054	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0055	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0056	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0057	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0058	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0059	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0060	3371	1	0	0	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0061	3371	1	0	0	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0062	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0063	3372	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0064	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0065	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0066	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0067	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0068	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0069	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0070	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0071	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0072	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0073	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	a0074	3371	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799