JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCLK2_chr4_150073445_150262438	0/1	a0001	766	89	41	14	19	2	12	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	1/0	a0002	766	15	5	1	8	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	a0003	755	6	1	2	1	0	2	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	a0004	766	5	5	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	a0005	714	1	0	1	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK3_chr3_36707421_36769553	1/1	a0001	817	412	76	78	195	15	46	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	a0002	817	3	3	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	a0003	817	2	2	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	a0004	817	2	1	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	a0005	817	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	a0006	817	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	a0007	817	1	0	0	0	1	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLRE1A_chr10_113829725_113859082	0/1	a0001	1040	244	34	53	115	14	27	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	1/0	a0002	1040	132	39	17	62	2	11	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0003	1040	9	9	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0004	1040	3	3	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0005	1040	2	2	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0006	1040	2	0	2	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0007	1040	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0008	1040	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0009	1040	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0010	1040	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0011	1040	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0012	1040	1	0	0	0	0	1	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0013	1040	1	0	0	1	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	a0014	1040	1	0	0	0	0	1	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1B_chr1_113900326_113919086	1/1	a0001	532	279	83	49	95	10	40	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0002	532	155	3	28	110	6	8	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0003	532	3	3	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0004	532	3	0	0	3	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0005	532	2	2	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0006	532	1	0	1	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0007	121	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0008	532	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	a0009	532	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1C_chr10_14899613_14959096	1/1	a0001	692	272	54	43	127	10	36	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0002	692	56	17	3	34	0	2	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0003	692	43	13	12	11	1	6	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0004	692	10	1	7	1	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0005	692	5	4	1	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0006	692	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0007	692	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0008	692	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0009	692	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0010	692	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	a0011	692	1	0	0	0	1	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCN_chr12_91135484_91187817	1/1	a0001	359	222	71	39	88	4	18	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	a0002	359	9	8	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	a0003	359	3	3	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	a0004	359	2	0	2	0	0	0	copy fasta	DCN	chr12	91135484	91187817