JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCP1A_chr3_53278429_53352543	1/1	a0001	582	355	83	59	157	14	40	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	a0002	582	8	0	5	3	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	a0003	582	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	a0004	582	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	a0005	582	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1B_chr12_1941053_2009457	0/0	a0001	618	204	34	35	110	8	17	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	1/1	a0002	617	128	39	24	40	7	16	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0003	618	6	0	0	6	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0004	618	6	0	0	6	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0005	618	6	6	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0006	618	6	6	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0007	618	5	5	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0008	619	5	0	1	3	0	1	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0009	617	3	0	2	0	0	1	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0010	617	2	2	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0011	618	1	0	1	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0012	617	1	0	0	0	1	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0013	617	1	0	0	1	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0014	617	1	0	0	0	0	1	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0015	617	1	1	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0016	618	1	0	1	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	a0017	618	1	1	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP2_chr5_112971798_113027195	1/1	a0001	420	364	96	60	158	14	34	copy fasta	DCP2	chr5	112971798	113027195
DCPS_chr11_126299060_126355005	1/1	a0001	337	337	88	70	122	14	41	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	a0002	337	3	0	0	3	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	a0003	337	1	0	0	0	0	1	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	a0004	337	1	0	0	1	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCST1_chr1_155028824_155055930	0/0	a0001	706	171	45	41	54	8	23	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	1/1	a0002	706	105	33	24	13	10	23	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0003	706	8	8	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0004	706	8	7	1	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0005	706	3	3	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0006	706	2	0	0	2	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0007	706	2	0	0	2	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0008	706	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0009	706	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0010	706	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0011	706	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0012	706	1	1	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0013	706	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	a0014	706	1	1	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST2_chr1_155013527_155038781	1/1	a0001	773	309	80	59	114	13	41	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0002	773	6	0	0	6	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0003	773	4	3	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0004	773	3	0	3	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0005	773	3	3	0	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0006	773	2	0	0	2	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0007	773	2	0	0	2	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0008	773	2	1	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0009	773	1	0	0	1	0	0	copy fasta	DCST2	chr1	155013527	155038781