JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCST2_chr1_155013527_155038781	0/0	a0010	773	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0011	773	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0012	773	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0013	773	1	0	0	1	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0014	773	1	0	0	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0015	773	1	0	0	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0016	773	1	0	0	0	0	1	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0017	773	1	1	0	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0018	773	1	0	1	0	0	0	copy fasta	DCST2	chr1	155013527	155038781
DCST2_chr1_155013527_155038781	0/0	a0019	773	1	0	0	0	1	0	copy fasta	DCST2	chr1	155013527	155038781
DCSTAMP_chr8_104334826_104361689	1/1	a0001	470	350	74	53	169	13	39	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0002	470	48	9	18	15	1	5	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0003	470	11	0	0	11	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0004	470	11	11	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0005	470	4	4	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0006	470	3	0	2	0	0	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0007	470	2	2	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0008	470	2	0	0	1	0	1	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0009	470	1	0	0	1	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0010	470	1	0	1	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	a0011	470	1	0	0	1	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCTD_chr4_182885091_182922386	1/1	a0001	178	376	96	68	162	12	36	copy fasta	DCTD	chr4	182885091	182922386
DCTN1_chr2_74356155_74385311	1/1	a0001	1278	357	80	59	180	9	27	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0002	1278	13	12	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0003	1278	2	0	0	2	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0004	1278	1	0	0	1	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0005	1278	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0006	1278	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0007	1278	1	1	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0008	1278	1	0	0	1	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0009	1278	1	0	0	0	0	1	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0010	1278	1	1	0	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0011	1278	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0012	1278	1	0	0	0	1	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	a0013	1278	1	0	1	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN2_chr12_57525051_57552192	1/1	a0001	401	345	86	56	160	8	33	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	a0002	401	5	1	0	1	0	3	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	a0003	401	1	1	0	0	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	a0004	36	1	0	0	1	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN3_chr9_34608546_34625495	1/1	a0001	186	422	96	81	185	16	42	copy fasta	DCTN3	chr9	34608546	34625495
DCTN3_chr9_34608546_34625495	0/0	a0002	186	5	0	0	5	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN3_chr9_34608546_34625495	0/0	a0003	186	1	0	1	0	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN4_chr5_150703440_150764017	1/1	a0001	460	155	35	31	61	0	26	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	a0002	460	112	61	13	32	0	6	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	a0003	460	14	0	0	14	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	a0004	460	3	0	0	3	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	a0005	460	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	a0006	460	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN5_chr16_23636466_23682472	1/1	a0001	182	314	72	60	138	14	28	copy fasta	DCTN5	chr16	23636466	23682472
DCTN6_chr8_30151369_30188639	1/1	a0001	190	391	91	62	188	10	38	copy fasta	DCTN6	chr8	30151369	30188639