JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DCTN6_chr8_30151369_30188639	0/0	a0002	190	1	1	0	0	0	0	copy fasta	DCTN6	chr8	30151369	30188639
DCTPP1_chr16_30418615_30435030	1/1	a0001	170	366	86	78	140	14	46	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	a0002	170	2	0	0	2	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	a0003	170	1	0	0	1	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	a0004	170	1	0	0	1	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCT_chr13_94431811_94484682	1/1	a0001	519	323	88	58	115	18	42	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0002	519	5	5	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0003	519	2	1	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0004	519	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0005	519	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0006	519	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0007	519	1	0	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0008	519	1	0	0	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	a0009	519	1	0	0	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCUN1D1_chr3_182933074_182985538	1/1	a0001	259	325	88	58	131	14	32	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	a0002	259	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D2_chr13_113450819_113495711	1/1	a0001	259	363	87	70	158	10	36	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	a0002	259	1	1	0	0	0	0	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D3_chr16_20849925_20905358	1/1	a0001	304	377	86	62	170	16	41	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	a0002	304	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D4_chr4_51838153_51921837	1/1	a0001	292	261	75	48	94	10	32	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	a0002	292	1	1	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D5_chr11_103045686_103097160	1/1	a0001	237	317	82	66	132	8	27	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	a0002	237	1	0	0	0	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCXR_chr17_82030858_82042697	1/1	a0001	244	384	94	74	156	15	43	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	a0002	244	36	0	6	28	1	1	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	a0003	244	1	0	0	1	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	a0004	244	1	0	0	1	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCX_chrX_111288779_111417192	1/1	a0001	366	182	69	23	67	5	16	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	a0002	365	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DDA1_chr19_17304563_17328298	1/1	a0001	102	388	92	82	156	16	40	copy fasta	DDA1	chr19	17304563	17328298
DDAH1_chr1_85313485_85470159	1/1	a0001	285	415	95	74	186	14	44	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	a0002	285	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH2_chr6_31722040_31734299	0/1	a0001	285	380	84	81	158	18	38	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	a0002	285	6	3	3	0	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	a0003	285	1	1	0	0	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDB1_chr11_61294451_61338105	1/1	a0001	1140	178	86	33	30	7	20	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	a0002	1140	1	0	0	0	1	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	a0003	1140	1	0	1	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB2_chr11_47209974_47244217	1/1	a0001	427	357	90	76	130	16	43	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	a0002	427	2	2	0	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	a0003	427	1	0	0	0	0	1	copy fasta	DDB2	chr11	47209974	47244217
DDC_chr7_50453442_50570405	0/1	a0001	480	320	57	68	148	14	32	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	a0002	480	18	16	0	0	0	2	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	a0003	480	14	3	0	11	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	a0004	480	5	5	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	1/0	a0005	480	1	0	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	a0006	480	1	1	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	a0007	480	1	0	0	1	0	0	copy fasta	DDC	chr7	50453442	50570405
DDHD1_chr14_53031755_53158323	0/0	a0001	902	175	24	34	84	10	23	copy fasta	DDHD1	chr14	53031755	53158323