JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDHD1_chr14_53031755_53158323	1/1	a0002	900	75	46	8	13	2	4	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0003	902	24	3	7	14	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0004	902	9	8	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0005	902	2	0	1	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0006	902	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0007	902	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0008	900	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0009	900	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	a0010	904	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD2_chr8_38226585_38267836	1/1	a0001	711	169	51	25	65	9	17	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	a0002	711	82	1	17	56	5	3	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	a0003	711	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	a0004	711	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	a0005	711	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDI1_chr11_104031640_104044196	1/1	a0001	396	404	72	75	198	15	42	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0002	396	16	8	1	4	1	2	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0003	396	6	0	0	6	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0004	396	5	0	0	5	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0005	396	4	4	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0006	396	3	3	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0007	396	3	3	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0008	396	2	2	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0009	396	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0010	396	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0011	396	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0012	396	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	a0013	396	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI2_chr1_15612458_15674044	1/1	a0001	399	270	90	57	83	12	26	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	a0002	399	1	0	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	a0003	399	1	0	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDIAS_chr11_82896736_82939659	1/1	a0001	998	138	17	24	79	4	12	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0002	998	120	23	25	54	3	15	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0003	998	45	28	11	1	2	3	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0004	998	39	26	9	0	0	4	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0005	998	16	0	0	12	1	3	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0006	998	2	2	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0007	998	2	0	0	0	0	2	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0008	998	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0009	998	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0010	998	1	0	0	0	0	1	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0011	998	1	0	0	1	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0012	998	1	0	1	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	a0013	998	1	0	0	1	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIT3_chr12_57511593_57525514	1/1	a0001	169	325	92	67	118	12	34	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	a0002	169	1	0	1	0	0	0	copy fasta	DDIT3	chr12	57511593	57525514
DDIT4L_chr4_100180870_100195468	1/1	a0001	193	433	90	76	211	11	43	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	a0002	183	16	1	7	0	3	5	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	a0003	141	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	a0004	193	1	0	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	a0005	193	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468