JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDIT4_chr10_72268924_72281036	1/1	a0001	232	346	92	68	126	10	48	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	a0002	232	1	1	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	a0003	232	1	1	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDN_chr12_48990149_49004375	0/0	a0001	711	170	52	25	68	7	18	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	1/1	a0002	711	160	24	31	72	9	22	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0003	711	9	7	2	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0004	711	4	0	0	4	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0005	711	4	2	2	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0006	711	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0007	711	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0008	711	1	1	0	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0009	711	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	a0010	711	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDOST_chr1_20646777_20666369	1/1	a0001	439	445	94	76	209	18	46	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	a0002	439	4	0	0	4	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	a0003	439	3	0	0	3	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	a0004	439	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	a0005	439	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	a0006	439	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	a0007	439	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDO_chr6_110386784_110420575	1/1	a0001	341	383	76	71	181	11	42	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0002	341	16	2	9	0	3	2	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0003	341	15	13	2	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0004	341	3	3	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0005	341	2	0	0	0	0	2	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0006	341	1	1	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0007	341	1	1	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	a0008	341	1	0	0	1	0	0	copy fasta	DDO	chr6	110386784	110420575
DDR1_chr6_30879519_30905156	0/1	a0001	913	418	88	74	194	16	45	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0002	913	5	2	2	0	0	1	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0003	913	2	0	0	2	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0004	913	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0005	906	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0006	913	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0007	913	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0008	913	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	a0009	913	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR2_chr1_162627464_162792405	1/1	a0001	855	298	82	48	126	10	30	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	a0002	855	2	0	0	2	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	a0003	855	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	a0004	855	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDRGK1_chr20_3185350_3209682	1/1	a0001	314	415	92	68	199	12	42	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	a0002	314	19	0	9	0	6	4	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	a0003	314	1	0	0	1	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	a0004	314	1	0	1	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	a0005	314	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	a0006	314	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDTL_chr22_23961888_23977556	0/0	a0001	134	311	81	59	126	16	29	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	a0002	118	9	0	0	8	0	1	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	a0003	134	1	1	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556