Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGB_chr6_146593972_146820462	0/0	a0028	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0029	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0030	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0031	1667	1	0	0	0	1	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0032	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0033	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0034	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0035	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGB_chr6_146593972_146820462	0/0	a0036	1667	1	1	0	0	0	0	copy fasta	ADGB	chr6	146593972	146820462
ADGRA1_chr10_133082924_133136675	1/1	a0001	560	351	84	78	128	15	44	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0002	560	7	7	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0003	560	2	0	0	2	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0004	560	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0005	560	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0006	560	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0007	560	1	0	0	0	1	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0008	560	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0009	560	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0010	556	1	0	0	1	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA1_chr10_133082924_133136675	0/0	a0011	560	1	1	0	0	0	0	copy fasta	ADGRA1	chr10	133082924	133136675
ADGRA2_chr8_37791883_37849896	1/1	a0001	1338	307	68	66	119	13	39	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0002	1338	9	0	0	8	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0003	1338	8	0	0	8	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0004	1264	7	0	1	3	0	3	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0005	1338	7	7	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0006	1338	6	6	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0007	1338	5	3	0	0	0	2	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0008	1220	4	0	1	3	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0009	1338	2	0	0	2	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0010	1338	2	2	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0011	1338	1	0	0	0	1	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0012	1338	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0013	1338	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0014	1338	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0015	1220	1	0	0	0	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0016	1220	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0017	1343	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0018	1338	1	1	0	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0019	1338	1	0	0	0	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0020	1338	1	0	0	1	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0021	1338	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0022	1338	1	0	1	0	0	0	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA2_chr8_37791883_37849896	0/0	a0023	1338	1	0	0	0	0	1	copy fasta	ADGRA2	chr8	37791883	37849896
ADGRA3_chr4_22382376_22521066	1/1	a0001	1321	150	46	28	54	5	15	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0002	1321	84	30	17	26	0	11	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0003	1321	14	0	4	9	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0004	1321	8	0	0	6	0	2	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0005	1321	7	6	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0006	1321	6	0	0	6	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0007	1321	4	0	0	4	0	0	copy fasta	ADGRA3	chr4	22382376	22521066