JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDTL_chr22_23961888_23977556	0/0	a0004	134	1	0	1	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	a0005	134	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	a0006	134	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDT_chr22_23966370_23979441	0/0	a0001	118	310	75	59	131	16	29	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	a0002	118	4	0	1	0	2	1	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	a0003	71	1	0	0	1	0	0	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	a0004	118	1	1	0	0	0	0	copy fasta	DDT	chr22	23966370	23979441
DDX10_chr11_108660069_108945927	1/1	a0001	875	290	85	38	130	8	27	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0002	877	24	3	3	17	0	1	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0003	87	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0004	875	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0005	875	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0006	817	1	0	1	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0007	875	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	a0008	875	1	0	0	1	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX11_chr12_31068860_31109799	0/0	a0000	0	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0001	906	268	38	41	158	8	23	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	1/1	a0002	906	91	24	23	28	4	10	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0003	906	14	3	5	0	2	4	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0004	906	10	3	3	4	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0005	906	4	2	2	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0006	906	4	4	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0007	907	4	4	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0008	906	3	3	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0009	906	2	0	0	2	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0010	906	2	0	0	2	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0011	906	2	2	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0012	906	2	0	2	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0013	906	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0014	906	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0015	906	1	0	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0016	906	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0017	906	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0018	906	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0019	906	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0020	906	1	0	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0021	906	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0022	906	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	a0023	906	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX17_chr22_38478438_38511311	1/1	a0001	650	363	92	52	174	8	35	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	a0002	650	1	0	0	0	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX18_chr2_117809691_117837377	1/0	a0001	670	233	29	38	135	6	24	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/1	a0002	670	160	57	35	37	10	20	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0003	670	5	0	5	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0004	670	3	3	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0005	670	2	2	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0006	670	2	2	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0007	670	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0008	670	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0009	670	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377