JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX18_chr2_117809691_117837377	0/0	a0010	670	1	0	0	1	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0011	670	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0012	670	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0013	670	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0014	670	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	a0015	670	1	0	0	1	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX19A_chr16_70341903_70378383	1/1	a0001	478	387	76	79	178	12	40	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	a0002	478	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	a0003	478	1	0	0	1	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	a0004	478	1	0	0	1	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	a0005	478	1	0	1	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	a0006	478	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19B_chr16_70294186_70340305	1/1	a0001	479	332	71	72	144	12	31	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	a0002	479	2	0	0	0	2	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	a0003	479	1	0	0	0	0	1	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	a0004	479	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX1_chr2_15586868_15636101	1/1	a0001	740	390	87	68	181	12	40	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	a0002	740	2	0	0	2	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	a0003	740	2	2	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	a0004	740	1	0	0	1	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	a0005	740	1	1	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX20_chr1_111750901_111773000	1/1	a0001	824	183	14	34	105	6	22	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0002	824	139	25	29	67	4	14	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0003	824	56	41	6	1	4	4	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0004	824	7	0	0	7	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0005	824	4	4	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0006	824	4	4	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0007	824	3	3	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0008	824	2	0	0	2	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0009	824	1	0	1	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0010	824	1	0	0	1	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0011	824	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0012	824	1	0	0	1	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0013	824	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	a0014	824	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX21_chr10_68951170_68990068	1/1	a0001	783	356	88	54	163	10	39	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	a0002	783	2	0	1	0	0	1	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	a0003	783	2	0	0	2	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	a0004	783	2	2	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	a0005	783	2	2	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	a0006	783	1	0	0	1	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	a0007	783	1	0	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX23_chr12_48824756_48857163	1/1	a0001	820	348	86	66	142	12	40	copy fasta	DDX23	chr12	48824756	48857163
DDX24_chr14_94043287_94086202	0/0	a0001	859	311	77	55	128	17	34	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0002	859	24	0	1	22	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0003	859	9	0	0	8	1	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0004	859	6	6	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0005	859	4	4	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0006	859	4	0	0	3	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0007	859	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202