JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX24_chr14_94043287_94086202	0/0	a0008	859	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0009	859	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0010	536	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0011	859	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0012	859	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0013	859	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0014	859	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/1	a0015	859	1	0	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	a0016	859	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX25_chr11_125899508_125933843	1/1	a0001	483	445	94	72	213	16	48	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	a0002	483	2	0	0	2	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	a0003	483	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX27_chr20_49214416_49249073	1/0	a0001	765	233	56	39	109	2	26	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0002	765	84	7	19	37	7	14	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/1	a0003	765	57	20	12	16	3	5	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0004	765	3	3	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0005	765	2	0	0	2	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0006	765	2	2	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0007	765	1	0	0	0	0	1	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0008	765	1	1	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0009	765	1	0	0	1	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0010	765	1	1	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	a0011	765	1	0	0	1	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX28_chr16_68015916_68028232	0/1	a0001	540	372	88	57	165	17	44	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	1/0	a0002	540	9	0	6	0	1	1	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	a0003	540	5	0	5	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	a0004	540	1	1	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	a0005	540	1	0	0	0	0	1	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	a0006	540	1	1	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	a0007	540	1	0	0	1	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX31_chr9_132587997_132674983	0/1	a0001	746	298	70	67	117	11	32	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	1/0	a0002	746	68	2	6	52	2	5	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0003	746	10	10	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0004	746	7	7	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0005	746	3	0	3	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0006	746	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0007	746	2	1	0	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0008	746	2	1	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0009	746	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0010	746	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0011	746	1	0	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0012	746	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0013	746	1	0	0	0	1	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0014	746	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0015	746	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0016	746	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	a0017	746	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX39A_chr19_14403798_14424341	1/1	a0001	427	387	90	78	157	14	46	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	a0002	427	4	4	0	0	0	0	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	a0003	427	1	0	0	1	0	0	copy fasta	DDX39A	chr19	14403798	14424341