JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX39B_chr6_31525226_31547003	0/1	a0001	428	445	92	88	200	18	46	copy fasta	DDX39B	chr6	31525226	31547003
DDX3X_chrX_41329162_41355274	1/1	a0001	662	301	67	48	153	7	24	copy fasta	DDX3X	chrX	41329162	41355274
DDX3Y_chrY_12899868_12925478	1/1	a0001	660	133	18	20	72	5	16	copy fasta	DDX3Y	chrY	12899868	12925478
DDX41_chr5_177506577_177521961	1/1	a0001	622	411	96	82	173	16	42	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	a0002	622	1	0	0	1	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX42_chr17_63769170_63824317	1/1	a0001	938	332	86	54	144	16	30	copy fasta	DDX42	chr17	63769170	63824317
DDX43_chr6_73389828_73422566	1/1	a0001	648	220	57	43	104	1	13	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	a0002	648	163	24	32	85	7	15	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	a0003	648	6	6	0	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	a0004	648	3	2	1	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	a0005	648	1	1	0	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	a0006	648	1	0	0	1	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX46_chr5_134753779_134836121	1/1	a0001	1032	342	80	58	156	8	38	copy fasta	DDX46	chr5	134753779	134836121
DDX47_chr12_12808346_12834981	1/1	a0001	455	437	88	78	204	18	47	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0002	455	2	0	0	2	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0003	455	2	0	0	2	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0004	455	2	2	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0005	455	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0006	410	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0007	455	1	1	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0008	455	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0009	455	1	1	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0010	455	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	a0011	455	1	0	0	0	0	1	copy fasta	DDX47	chr12	12808346	12834981
DDX49_chr19_18914715_18933630	1/1	a0001	483	370	74	71	161	16	46	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0002	483	9	6	3	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0003	483	8	8	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0004	452	6	5	0	0	0	1	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0005	483	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0006	483	1	1	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0007	483	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0008	483	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	a0009	483	1	0	0	0	0	1	copy fasta	DDX49	chr19	18914715	18933630
DDX4_chr5_55733061_55822157	1/1	a0001	724	302	86	52	128	10	24	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	a0002	724	41	0	7	30	2	2	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	a0003	724	1	0	0	1	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	a0004	724	1	0	1	0	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	a0005	724	1	0	0	1	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX50_chr10_68896315_68951847	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	1/1	a0001	737	325	87	55	131	12	38	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	a0002	737	5	5	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	a0003	737	1	0	1	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	a0004	737	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	a0005	737	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX51_chr12_132131594_132149319	0/1	a0001	666	162	15	49	74	8	15	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0002	666	82	41	13	22	3	3	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	1/0	a0003	666	37	10	7	7	1	11	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0004	654	12	10	2	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0005	666	7	0	0	6	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0006	183	6	2	2	1	0	1	copy fasta	DDX51	chr12	132131594	132149319