JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX51_chr12_132131594_132149319	0/0	a0007	654	6	0	1	5	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0008	666	4	4	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0009	666	3	0	0	3	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0010	666	2	1	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0011	666	2	0	0	2	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0012	666	2	2	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0013	165	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0014	666	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0015	666	1	0	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0016	666	1	0	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0017	666	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0018	666	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0019	666	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0020	666	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	a0021	666	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX52_chr17_37604739_37648446	0/0	a0001	599	243	33	51	120	8	31	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/1	a0002	599	163	50	16	79	4	13	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	a0003	599	2	2	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	a0004	599	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	a0005	599	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	a0006	599	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX53_chrX_22994960_23008589	1/1	a0001	631	231	27	57	119	10	16	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0002	631	65	0	0	47	2	16	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0003	631	30	29	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0004	631	16	15	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0005	631	8	8	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0006	631	2	0	0	2	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0007	631	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0008	338	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0009	631	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0010	631	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0011	631	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	a0012	631	1	1	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX54_chr12_113152173_113190478	1/1	a0001	881	212	56	38	77	11	28	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0002	881	41	7	0	33	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0003	882	27	7	0	17	0	3	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0004	881	4	0	1	0	0	3	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0005	881	4	4	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0006	881	3	1	1	0	1	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0007	881	2	0	0	2	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0008	881	1	0	0	0	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0009	881	1	0	0	0	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0010	881	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0011	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0012	881	1	0	0	0	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0013	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0014	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0015	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0016	882	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0017	881	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478