JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX54_chr12_113152173_113190478	0/0	a0018	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0019	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	a0020	881	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX55_chr12_123597099_123625943	1/1	a0001	600	211	48	52	75	11	23	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0002	600	46	34	5	2	5	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0003	600	36	12	5	11	1	7	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0004	600	4	0	2	0	0	2	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0005	600	3	0	0	3	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0006	600	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0007	600	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	a0008	600	1	0	0	0	1	0	copy fasta	DDX55	chr12	123597099	123625943
DDX56_chr7_44560804_44578908	1/1	a0001	547	392	93	70	165	16	46	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	a0002	547	8	0	0	8	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	a0003	547	3	1	2	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	a0004	547	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	a0005	237	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	a0006	547	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX59_chr1_200639037_200674907	1/1	a0001	619	280	73	59	108	13	25	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	a0002	619	106	21	16	54	1	14	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	a0003	619	2	2	0	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	a0004	619	1	0	1	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	a0005	619	1	0	0	0	0	1	copy fasta	DDX59	chr1	200639037	200674907
DDX5_chr17_64493254_64511289	1/1	a0001	614	365	94	58	150	13	48	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	a0002	614	3	0	2	0	1	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	a0003	614	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	a0004	614	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX60L_chr4_168351735_168485492	0/0	a0001	1706	35	1	11	14	3	6	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0002	1706	32	11	5	6	2	8	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0003	1706	30	0	11	13	2	4	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0004	1706	25	15	4	3	3	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0005	1706	20	0	7	10	0	3	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0006	1706	10	0	7	0	1	2	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/1	a0007	1706	10	1	2	5	1	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0008	1706	8	8	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0009	1706	7	1	1	2	0	3	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0010	1706	7	6	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0011	1706	5	0	0	4	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0012	1706	4	4	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0013	1706	4	4	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0014	1706	4	4	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0015	1706	4	1	0	2	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0016	1706	4	0	1	3	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0017	1706	3	3	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0018	1706	3	0	1	0	1	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0019	1706	3	3	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0020	1706	3	3	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0021	1706	3	0	0	3	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0022	1706	2	0	0	0	0	2	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0023	1706	2	0	1	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0024	1706	2	2	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492